How It's Done

Behind The process

HeredityLab provides ethnicity estimates that reflect how similar your DNA is to populations in a reference panel. Estimates are provided on an ethnic and regional basis, with the ethnic terms reflecting established ethnic groups and the regional terms reflecting regional, subregional, and micro level regions.  To achieve this, we used the following steps, which included data gathering, establishing the panel, creation of an inference method, and methodology refinement. The genome is composed of a series of nucleotides, with the position of each nucleotide being particular to certain ethnic groups, and this allows us to reliably predict which segments of your DNA correspond to each of the ethnic groups in our panel.

1. Data Gathering

Representative genomes from worldwide populations were gathered. Information was first collected from the main publicly accessible research data sets. These include, but are not limited to, the 1000 Genomes Project, Human Genome Diversity Project (CEPH-HDGP), International HapMap Project (HapMap3), and the Population Reference Sample Project. To create a stronger reference panel that is inclusive of micro level regions, privately available reference data sets were collected and incorporated into the wider sample set.  Following the aggregation of all sample data, samples were clustered through principal component analysis and samples that were not consistent with the characteristics of established clusters were removed. Within the DNA, pairs of alleles (termed ‘genotypes’) are found at different positions (single nucleotide polymorphisms) and the probability of a single genotype appearing at certain positions is dependent on the ethnic group. The likelihood of your DNA segment matching an ethnic group is based on the data of particular genotype locations in relation to that of other ethnic groups.



2. Establishing the Panel

Groups of neighboring SNPs have varying degrees of prevalence depending on population and the occurrence of particular haplotypes was noted for each reference cluster. In order to match parts of your genome with our reference groups, the digital version of your genome is virtually separated into hundreds of small divisions. These virtual divisions (commonly termed ‘windows’) are each examined, matched to groups within the reference panel, then a mathematical model (the Hidden Markov Model) is used to analyze data.  Each window of division covers 4-12 centimorgans, and the Hidden Markov Model evaluates ethnicity at each position. The model examines the SNP configurations and is used to find from a statistical standpoint which group the DNA corresponds to. The term ‘haplotype’ refers to segments of adjoining dna within chromosomes that are extremely informative when looking for genetic signatures that correspond to particular ethnic groups. We are comparing the haplotype within each division to those in the reference groups. We used the BEAGLE program, which implements a Hidden Markov model, to create a series of haplotype cluster models and further refine the data.  When integrated into our model, haplotype combinations are estimated after being given a set of genotypes. The haplotype cluster model contains clusters of similar haplotypes groupings, with these haplotype clusters being linked to reference groups. 

 



3. Inference method Created

In order to reliably assign segments of DNA to reference panel groups, models were created to predict the likelihood that each of the haplotypes in each segment belonged to a particular reference group. A multiclass support vector machine algorithm was used to learn the boundaries between reference populations based on the existing data. The SVM assigns each segment to a reference group, while a Hidden Markov Model corrects errors within the output. The HMM is used to assign likelihood of all reference groups to the haplotypes present in your genome, resulting in the most probable ethnic combination with the highest likelihood of being the actual combination. The final ethnic estimate represents the amount of each ethnicity as a portion of the most likely combination. 



4. Extensive Refinement of Methods

The results of these algorithms were tested to assess for validity and parameters were redefined as needed. Additional testing was completed until working predictive models were established with a reasonable degree of accuracy. To validate the process, we tested individuals from the reference panel and additional individuals from a separate specially designated panel which was created for testing purposes. The second panel contained samples with known ethnicity and model changes were made until the accuracy of the results reliably entered an acceptable range. 

Common metrics for the accuracy of results include precision and recall, with precision being the actual amount of the ethnicity divided by the predicted amount, and the recall being the predicted amount divided by the actual amount.  High precision systems with low recall have a tendency to assign DNA segments to a particular group only when there is a high level of confidence, but usually leaves a significant amount of DNA unassigned. High recall systems with low precision have a tendency to readily assign DNA segments to reference groups but can be incorrect at times. The continental level has the highest amount of precision, with precision declining as the assignments become more granular. Our system attempts several degrees of classification so low recall is seen where groups are hard to distinguish from others. 

 

Accuracy of Results

How accurate are these values?

Common metrics for the accuracy of results include precision and recall, with precision being the actual amount of the ethnicity divided by the predicted amount, and the recall being the predicted amount divided by the actual amount.  High precision systems with low recall have a tendency to assign DNA segments to a particular group only when there is a high level of confidence, but usually leaves a significant amount of DNA unassigned. High recall systems with low precision have a tendency to readily assign DNA segments to reference groups but can be incorrect at times. The continental level has the highest amount of precision, with precision declining as the assignments become more granular. Our system attempts several degrees of classification so low recall is seen where groups are hard to distinguish from others. 

Assigning DNA segments to groups in the reference panel is dependent on the models used and all values are approximate values. While the models are created to approximate with as much accuracy as possible, they are not always completely correct and should be viewed as estimates only which have been calculated to the best of our computational ability.

Reference Panel

The following is a list of the groups that are part of the reference panel. Note that the quantity isn’t static and more samples may be added to the list as needed.

Europe:
German, Dutch, French (North), French (South), French, Swiss, Breton,  Frisian, Cypriot, Albanian, Sicilian, Greek, Serbian, Slovenian, Italian (North),  Italian (South), Croatian, Maltese, Sardinian, Sicilian, Bosniak, Corsican, Irish, Welsh, English, Scottish, Swedish, Finnish, Danish, Norwegian, Sami, Latvian, Lithuanian, Estonian, Hungarian, Ashkenazi Jewish, Slovak, Czech, Austrian, Portuguese, Spanish, Basque, Belarusian, Romanian, Bulgarian, Ukrainian, Russian, Polish, Lipka Tatar, Romanian Tatar

Caucasus:
Georgian, Armenian, Azeri, Dargin, Adyghe, Ossetian, Kabardian, Abazin, Tatar

West Africa:
Sierra Leone, Liberia, Guinea, Kru, Ewe, Wolof, Sahelian, Yoruba, Mandinka, Bambara, Fon, Abron, Akan, Igbo, Nigerian (Central, East), Fulani (Nigeria, Guinea), Mende, Angolan (North, South), Burkina Faso.

Southern Africa:
Kalahari Forager (Khoekhoen, San), Botswana (Tswana people), South Africa (Northeast, Southeast), Zimbabwe (Shona people)

East Africa:
Kalenjin, Kikuyu, Somali (North, South), Luhya, Sudan (North, Central, South), South Sudan, Maasai, Luo, Merina, Makua, 
Wolayta, Amhara, Oromo, Tigray, Sidama, Afar, Hadiya

Central Africa:
Central African Forager (Mbuti, Biaka), Cameroon (Fang, Bamoun),  Congolese West (Anamongo, EsiKongo), Congolese East (Baluba), Central African Republic

Southeast Asia: Filipino (North, South), Indonesian (East, West), Malaysian, Thai, Cambodian (Khmer), Bamar, She, Miao, Filipino, Dayak, Batak, Nyishi, Tangsa, Yi, Lahu, Mon, Vietnamese, Assamese (Bodo Kachari, Rajbongshi).

South Asia:
Koli, Bengali, Marathi, Baloch, Uttar Pradesh, Odisha, Karnataka, Pathan, Sindhi, Gujarati, Punjabi, Rajasthani, Malayali, Telugu, Sinhalese, Bhojpuri, Odisha, Nepalese, Punjabi, Makrani, Kho, Bhil, Kannada, Tamil.

The Americas:
Inuit, Indigenous North, Indigenous Central Plains, Indigenous Southwest US, Mexican Indigenous North, Mexican Indigenous South, Indigenous Central America, Indigenous Caribbean (Taino), Indigenous South America (Northwest, Andes, Southern Cone,  Amazonian).

Oceania:
Polynesian, Maori, Melanesian, Polynesian, Aboriginal Australian, Hawaiian, Moluccan, Tahitian, Tonga and Samoa.

East Asia and Siberia:
Evenk, Orok, Chinese (North, Central, South), Han, Nashi, Japanese, Yi, She, Korean, Manchu, Tujia, She, Zhuang, Ryukyuan
, Nenet

Mideast: Arabian Peninsula (Eastern), Arabian Peninsula (Western), Turkish (West, East, Central, Southeast, Southwest, Northwest), Druze, Lebanese, Egyptian (North, South), Jordanian, Yemeni (Western, Eastern), Syrian (West), Assyrian, Palestinian, Bedouin, Iranian (West, Central, East), Kurdish (West, East),  Iraqi (Central, South), Assyrian, Sephardic Jewish, Palestinian Christian, Lebanese Christian, Egyptian Coptic.

North Africa: Algerian, Tunisian, Moroccan (North, South), Libyan (East, West), Berber (Algeria)

The Jewish Diaspora Genetic Test focuses on these Jewish genetic groups:
Persian Jewish, Ashkenazi, Eastern Caucasus Jewish, Northern-Central Mesopotamia Jewish, Eastern Maghrebi Jewish (Moroccan, Algerian), Western Maghrebi Jewish (Tunisian, Libyan), Sephardic (Turkey) Jewish, Northern Levantine Jewish, Ethiopian Jewish, Yemeni Jewish, Indian Jewish.

The Central Asian Genetic Test focuses on these groups:
Hazara, Kyrgyz, Kazakh, Uzbek (East, West), Uyghur (West, East, Southwest), Pashtun (Afghanistan, Pakistan), Turkmen (Southwest, West, Southeast), Iranian (Northeast, East, Southeast, Central), Mongolian. 

Reference Panel Sample Details

The following is a list containing the quantity of samples used per group within the reference panel. Note that the quantities are not fixed, and samples may be added or removed depending on changes we make to the reference panel. We may create some new categories and merge some categories depending on the level of accuracy. The most likely ones to be merged with others are those that have a high degree of overlap or low precision and recall. Also note that some of the categories under the Jewish Genetic Test have a slightly different set of reference panel samples than those same categories under the general reference panel, hence the statistics for precision and recall are different. 

In these cases, the values under the Precision column represent how much of the assigned ethnicity is correct, while the values under the Recall column represent how much of the actual ethnicity is assigned by the process. An example for Precision would be if someone who is assigned 80% Makua by the algorithm, but only 40% is actually truly Makua. The precision value in this case would be 0.50. An example for Recall would be someone having 100% Irish ancestry, but only 20% is estimated by the model. In this case, the recall would be 0.20. 

Group

Number of Samples

PrecisionRecall
Europe   
1. German930.690.72
2. Dutch570.880.74
3. French (North)380.860.76
4. French (South)520.850.92
5. French610.880.91
6. Swiss430.760.71
7. Breton290.650.64
8. Frisian470.680.93
9. Cypriot300.630.88
10. Albanian190.610.62
11. Sicilian280.730.97
12. Greek520.910.75
13. Serbian240.720.93
14. Slovenian220.560.9
15. Italian (North)1090.620.65
16. Italian (South)1030.90.77
17. Croatian420.650.86
18. Maltese370.780.79
19. Sardinian510.880.93
20. Bosniak640.810.61
21. Corsican210.520.83
22. Irish290.610.94
23. Welsh1350.930.67
24. English620.70.91
25. Scottish1480.840.94
26. Swedish1210.820.81
27. Finnish1050.960.79
28. Danish940.730.7
29. Norwegian810.810.66
30. Saami1070.890.83
31. Latvian100.710.69
32. Lithuanian870.650.61
33. Estonian550.850.77
34. Hungarian380.750.83
35. Ashkenazi Jewish1180.770.86
36. Slovak340.890.78
37. Czech320.520.94
38. Austrian750.60.83
39. Portuguese520.570.65
40. Spanish1050.640.95
41. Basque920.840.77
42. Belarusian540.890.94
43. Romanian450.910.96
44. Bulgarian580.960.94
45. Ukrainian810.680.72
46. Russian1040.860.61
47. Polish1140.770.87
48. Eastern European Tatar120.630.92
49. Greek Mainlander560.650.8
50. Greek Islander590.610.86
51. Macaronesia350.540.73
    
    
    
Caucasus   
1. West Caucasus510.870.82
2. Armenian750.710.96
3. Azeri460.860.94
4. North Caucasus (Ossetian, Adygei, Balkar, Kabardin)370.620.65
5. Northeast Caucasus (Lezgin, Tabassaran, Chechen)330.850.74
    
    
    
West Africa   
1. Senegal (Wolof)470.80.85
2. Fulani (Guinea)240.910.68
3. Krou400.80.91
4. Sierra Leone530.940.75
5. Kwa610.830.72
6. Nigeria West1060.870.94
7. Nigeria East1130.950.83
8. Nigeria North360.540.74
9. Gabon and Cameroon280.970.68
10. Western Congo520.650.54
11. South Angola60.670.73
12. Malinke380.60.64
13. Burkina Faso40.580.62
14. Sahelian West150.650.7
    
    
    
Southern Africa:   
1. Kalahari Forager420.850.87
2. Tswana250.820.79
3. South African Bantu (Northeast, Southeast)940.750.91
4. Shona290.680.83
5. Bemba30.520.75
    
    
    
East Africa:   
1. Kenya West (Kalenjin, Luo)470.660.79
2. Kenya Central (Kikuyu)160.960.89
3. Somali (North, South)920.690.9
4. Sudan (North, Central, South)820.610.94
5. South Sudan (Dinka, Nuer)310.790.62
6. Maasai220.670.85
7. Malagasy Highlander290.690.74
8. Malagasy Coast240.720.61
8. Mozambique (Makua)170.780.67
9. Ethiopia North (Tigray, Amhara, includes Eritrean)480.880.71
10. Ethiopia South (Oromo, Wolayta)110.550.58
11. Rwanda (Hutu, Tutsi)140.630.54
12. Uganda (Baganda)10  
    
    
    
Central Africa:   
1. Central African Forager (Mbuti, Biaka)460.940.83
2. Congolese East (Baluba)290.690.95
3. Central African Republic80.430.65
    
    
    
Southeast Asia:   
1. Filipino (North, South)1030.870.64
2. Indonesian (East, West)1150.750.96
3. Eastern SEA (Vietnamese Kinh, Lao)720.620.97
4. Yunnan Hills (Lahu)580.770.73
5. Central SEA (Thai, Mon, Cambodian, Peninsular Malaysian)320.630.7
6. Western SEA (Burmese – Bamar)410.630.64
7. Dai (Yunnan)240.580.88
8. Indigenous Borneo160.640.92
9. Indigenous Sumatra (Batak)100.630.7
10. Nyishi (Arunachal Pradesh)620.720.79
11. Tangsa (Arunachal Pradesh)640.830.61
12. Assamese (Bodo Kachari, Rajbongshi)110.730.72
13. Bodo140.640.62
14. Rajbanshi90.890.74
    
    
    
South Asia:   
1. Koli100.670.8
2. Bengali670.870.92
3. Marathi1140.830.75
4. Baloch460.680.72
5. Uttar Pradesh260.90.62
6. Odisha740.920.91
7. Karnataka630.790.8
8. Pathan460.90.78
9. Sindhi850.740.7
10. Gujarati920.830.68
11. Rajasthani780.850.77
12. Malayali200.670.82
13. Telugu740.690.77
14. Sinhalese420.720.6
15. Bhojpuri190.870.69
16. Nepalese1060.890.83
17. Punjabi250.690.9
18. Makrani130.470.65
19. Kho260.490.59
20. Bhil600.750.84
21. Tamil710.850.91
22. Pakistani GI (Kalash)200.660.9
    
    
    
The Americas:   
1. Inuit610.770.72
2. Indigenous North380.910.58
3. Indigenous Central Plains530.840.66
4. Indigenous Southwest US610.810.65
5. Mexican Indigenous (North, South)1070.920.87
6. Indigenous Central America320.660.82
7. Indigenous Caribbean (Taino)230.730.65
8. Indigenous South America (Northwest, Andes, Southern Cone, Amazonian)1040.750.68
    
    
    
Oceania:   
1. Polynesian550.90.94
2. Maori500.750.84
3. Melanesian470.640.95
4. Aboriginal Australian260.860.96
5. Hawaiian290.850.92
6. Moluccan260.720.64
7. Tahitian50.780.78
8. Tonga and Samoa470.770.66
    
    
    

East Asia and Siberia:

   
1. Western Siberian (Chukchi)150.530.77
2. Central Siberian GI (Nganasan)80.480.79
3. Chinese North (Han)750.890.9
4. Chinese Central (Han)450.830.88
5. Chinese South (Han)720.830.67
6. Japanese200.790.66
7. Korean (South)1170.850.73
8. Manchu (Northeast China)430.720.72
9. Zhuang (South China)50.850.81
10. Ryukyuan1010.780.97
11. Miao (South China)480.690.86
12. Wuling Mountains (Central China South) (She, Miao, Tujia)390.650.67
13. Hengduan Mountains (Yi, Naxi)70.610.6
14. Tungusic Manchurian (Xibo, Hezhen)320.520.43
15. Mongolian940.760.94
    
    
    
Mideast:   
1. Arabian Peninsula (Eastern)490.80.64
2. Arabian Peninsula (Western)340.840.83
3. Turkish (West, East, Central, Southeast, Southwest, Northwest)1170.810.67
4. Druze410.790.66
5. Lebanese380.620.77
6. Egyptian (North, South)1060.950.66
7. Jordanian640.650.76
8. Yemeni (Western, Eastern)570.940.93
9. Syrian (West)580.810.74
10. Assyrian470.80.63
11. Palestinian350.860.61
12. Bedouin (Sinai)120.70.92
13. Iranian (West, Central, East)1070.780.71
14. Kurdish (West, East)750.770.82
15. Iraqi (Central, South)410.80.73
16. Sephardic Jewish720.630.81
17. Palestinian GI (Palestinian Christians, Palestinian Samaritans, Palestinian Muslims (Nablus))680.660.85
18. Lebanese GI (Lebanese Christians, rural Lebanese Shia)660.620.89
19. Egyptian GI (Coptic Christian)700.890.87
20. Iranian GI (Zoroastrian)150.630.8
    
    
    
North Africa:   
1. Algerian220.780.87
2. Tunisian500.630.72
3. Moroccan (North, South)750.620.81
4. Libyan (East, West)440.750.74
5. Berber (Algeria)360.660.79
    
    
    
    

Jewish Diaspora Genetic Test:

   
1. Persian Jewish1020.740.71
2. Ashkenazi1180.890.65
3. Caucasus Jewish640.910.62
4. Northern-Central Mesopotamia Jewish240.840.74
5. Eastern Maghrebi Jewish (Moroccan, Algerian)500.660.76
6. Western Maghrebi Jewish (Tunisian, Libyan)870.930.88
7. Sephardic Jewish (Turkey)610.780.68
8. Northern Levantine Jewish920.690.89
9. Ethiopian Jewish370.870.66
10. Yemeni Jewish340.860.81
11. Indian Jewish150.60.77
    
    
    

Central Asian Genetic Test:

   
1. Hazara360.620.68
2. Kyrgyz280.690.95
3. Kazakh850.780.94
4. Uzbek (East, West)650.620.72
5. Uyghur (West, East, Southwest)580.580.7
6. Pashtun (Afghanistan, Pakistan)820.810.9
7. Turkmen (Southwest, West, Southeast)810.740.72
8. Iranian (Northeast, East, Southeast, Central)1040.890.73
9. Mongolian450.680.71

Sample Sources

The following is a list of the samples within the reference panel, with a description of the ethno-geographic sources for a majority of the known samples within each sample set. The samples come from both public data sets and our outreach program. Because of this, the samples fall into two categories: ones where we could verify the ancestral regions of origin, and ones where we could not verify the precise ancestral regions of origin. Listed are the regions of origin for samples which could be verified. Participants were screened based on history of ancestry in a particular region, based on their parents or grandparents being from the region. For some of the samples which we were not able to verify the regions of origin, we compared these samples to known samples per country and listed the ones that clearly clustered with these known samples within each region specific category. This process is meant to generate approximations as to the ancestral locations of origin. 

Group
Source of A Plurality of Samples
Europe 
1. German
North Rhine Westphalia, Hesse, Rhineland Palatinate, Baden Wurttemberg
2. Dutch
South Holland, North Brabant, Utrecht, North Holland
3. French (North)
Hauts de France, Normandie, Grand Est, Centre Val de Loire
4. French (South)
Provence Alpes- Côte d’Azur, Auvergne Rhone Alpes, Occitane
5. French
France: unspecified
6. Swiss
Switzerland: unspecified
7. BretonBretagne
8. Frisian
Friesland, Nordfriesland
9. Cypriot
Limassol, Nicosia
10. Albanian
Tirana, Fier, Durres, Lezhe, Shkoder
11. Sicilian
Palermo, Catania
12. Greek
Kendriki Makedonia , Attiki
13. Serbian
Sumadija, Kolubara
14. SlovenianSavinga, Drava
15. Italian (North)
Lombardy, Emilia Romagna
16. Italian (South)
Campania, Apulia, Calabria
17. Croatian
Split Dalmatia, Primorje Gorski Kotar
18. Maltese
Valletta, Birkirkara
19. Sardinian
Cagliari, Sassari, Nuoro, Oristano
20. Bosniak
Sarajevo, Tulza, Zenica-Doboj
21. Corsican
Upper Corsica, Southern Corsica
22. Irish
Cork, Kildare, Meath, Antrim, Down, Londonderry, Wicklow, Louth, Wexford, Armagh, Tyrone
23. Welsh
Cardiff, Swansea, Rhondda Cynon Taf
24. English
Greater Manchester, West Midlands, West Yorkshire, Merseyside, South Yorkshire
25. Scottish
Fife, North Lanarkshire, South Lanarkshire, Highland, West Lothian
26. Swedish
Vastra Gotalands lan, Skane lan, Ostergorlands lan, Uppsala lan, Sodermanlands lan, Jonkopings lan
27. Finnish
Uusimaa, Pirkanmaa, Varsinais-Suomi, Pohjois-Pohjanmaa, Satakunta
28. Danish
Syddanmark, Midtjylland, Zealand, Nordjylland
29. Norwegian
Viken, Vestland, Rogaland, Trondelag, Innlandet
30. Saami
Finnmark (Norway)
31. Latvian
Pierigas, Zemgales, Kursemes, Vidzemes
32. Lithuanian
Vilnius, Kaunas, Klaipeda, Siauliai
33. Estonian
Harju, Ida-Viru, Tartu, Parnu, Laane-Viru
34. Hungarian
Pest, Gyor-Moson-Sopron, Hajdu-Bihar
35. Ashkenazi Jewish
Warsaw, Budapest, Lodz, Lviv
36. Slovak
Bratislava, Kosice, Presov, Zilina
37. Czech
Central Bohemian Region, Praha, South Moravian Region, Moravian-Silesian Region
38. Austrian
Lower Austria, Upper Austria, Styria, Tyrol
39. Portuguese
Vila Real, Aveiro, Braga, Setubal, Santarem
40. Spanish
Andalusia, Catalonia, Valencia, Castilla y Leon, Galicia, Castilla La Mancha
41. BasquePais Vasco
42. Belarusian
Homel, Vitebsk, Brest, Hrodna
43. Romanian
Cluj, Timis, Iasi, Constanta, Prahova, Brasov
44. Bulgarian
Plovdiv, Varna, Burgas, Stara Zagora, Blagoevgrad
45. Ukrainian
Kharkiv, Dnipropetrovsk, Lviv, Odessa
46. Russian
Krasnodar Krai, Sverdlovsk Oblast, Rostov Oblast
47. Polish
Masovian Voivodeship, Silesian Voivodeship, Lesser Poland Voivodeship, Greater Poland Voivodeship, Lower Silesian Voivodeship
48. Eastern European Tatar
Eastern Poland (Lipka Tatars), Constanta (Romanian Tatars)
49. Greek Mainlander
Attiki, Kentriki Makedonia, Sterea Ellada, Thessalia, Peloponnisos
50. Greek Islander
Kriti, Evia, Rodos
51. Macaronesia
Tenerife, Gran Canaria, Lanzarote, Funchal
  
  
  
Caucasus 
1. West Caucasus
Georgia: Imereti, Shida Kartli, Adjara AR, Abkhazia AR Ethnic Groups: Georgian, Abkhazian.
2. Armenian
Armenia: Ararat, Kotayk, Lori
3. Azeri
Azerbaijan: Central Aran, Shirvan-Salyan.
4. North Caucasus (Ossetian, Adygei, Balkar, Kabardin)
Ethnic Groups: Ossetian, Adygei, Balkar, Kabardin
5. Northeast Caucasus (Lezgin, Tabassaran, Chechen)
Ethnic Groups: Lezgin, Tabassaran, Chechen
  
  
  
West Africa 
1. Senegal (Wolof)
Senegal: Thies, Diourbel, Fatick, Ziguinchor
2. Fulani (Guinea)
Guinea: Kankan, Nzerekore
3. Krou
Liberia: Nimba County. Ivory Coast: Montagnes.
4. Sierra Leone
Sierra Leone: Kenema, Bo. Ethnic Groups: Temne, Mende.
5. Kwa
Southern Ghana: Volta, Ashanti, Central. Eastern Ivory Coast: Lacs, Comoe, Lagunes. Togo: Plateaux
6. Nigeria West
Nigeria: Oyo, Ogun, Ondo. Benin: Plateau. Ethnic Groups: Yoruba
7. Nigeria East
Nigeria: Cross River, Imo, Benue. Ethnic Groups: Igbo, Ijaw, Ibibio, Ekoi, Tiv, Jukon.
8. Nigeria North
Nigeria: Kano, Jigawa. Niger: Tahoua, Maradi. Ethnic Groups: Hausa, Fulani.
9. Gabon and Cameroon
Cameroon: Bamileke tribe (Ouest), Pahouin tribe (Sud). Gabon: Pahouin tribe (Woleu-Ntem).
10. Western Congo
Democratic Republic of the Congo: EsiKongo Tribe. Angola: Ambundu Tribe
11. South Angola
Angola: Ovambo Ethnic Group (Cunene)
12. Malinke
Mali: Sikasso, Guinea: Kankan
13. Burkina Faso
Burkina Faso: Mossi Tribe (Centre-Sud, Centre-Ouest)
14. Sahelian West
Mauritania: Beidane Ethnic Group
  
  
  
Southern Africa: 
1. Kalahari Forager
Namibia: Otjozondjupa. Ethnic Groups: Khoekhoen, San.
2. Tswana
Botswana: Central District, Kweneng District.
3. South African Bantu (Northeast, Southeast)
Eastern South Africa: KwaZulu Natal, Mpuma-Langa
4. Shona
Zimbabwe: Manicaland Province, Midlands Province.
5. Bemba
Zambia: Lusaka Province, Central Province
  
  
  
East Africa: 
1. Kenya West (Kalenjin, Luo)
Kenya: Western Province, Nyanza Province, Rift Valley Province
2. Kenya Central (Kikuyu)
Kenya: Rift Valley Province, Eastern Province
3. Somali (North, South)
Somalia North: Somaliland, Puntland. Somalia Central: Galmudug, Hirshabelle. Somalia South: South West Region, Jubaland.
4. Sudan (North, Central, South)
North: River Nile State, Central: El Gazira, North Kordofan, South: Blue Nile, South Kordofan
5. South Sudan (Dinka, Nuer)
South Sudan: Central Equatoria, Eastern Equatoria
6. Maasai
Kenya: Rift Valley Province
7. Malagasy Highlander
Madagascar: Antananarivo Province
8. Malagasy Coast
Madagascar: Atsinanana. Ethnic Group: Betsimisaraka People
8. Mozambique (Makua)
Mozambique: Zambezia, Nampula
9. Ethiopia North (Tigray, Amhara, includes Eritrean)
Ethiopia: Amhara and Tigray Regions, Eritrea.
10. Ethiopia South (Oromo, Wolayta)
Ethiopia: Oromia and Wolaita Regions
11. Rwanda (Hutu, Tutsi)
Rwanda: Eastern Province
12. Uganda (Baganda)Central Uganda
  
  
  
Central Africa: 
1. Central African Forager (Mbuti, Biaka)
Democratic Republic of the Congo: Mbenga and Mbuti ethnic groups.
2. Congolese East (Baluba)
Democratic Republic of the Congo: Kasai Province
3. Central African Republic
Central African Republic: Sango ethnic group.
  
  
  
Southeast Asia: 
1. Filipino (North, South)
The Philippines: Luzon (North), Mindanao (South).
2. Indonesian (East, West)
Indonesia: Java, Borneo, Sumatra, Sulawesi.
3. Eastern SEA (Vietnamese Kinh, Lao)
Vietnam: Northwest Region, Northeast Region, Central Highlands Region. Laos: Salavan, Savannakhet.
4. Yunnan Hills (Lahu)
China: Yunnan Province. Vietnam: Lai Chau Province
5. Central SEA (Thai, Mon, Cambodian, Peninsular Malaysian)
Peninsular Malaysia: Eastern Region, Southern Region. Cambodia: Mekong Lowlands, Eastern Region. Thailand: Northeast Region, Central Region. Myanmar: Mon State. Thailand: Pathum Thani Province.
6. Western SEA (Burmese – Bamar)
Myanmar: Magwe, Sagaing
7. Dai (Yunnan)
China: Yunnan Province
8. Indigenous Borneo
Indonesia: Borneo
9. Indigenous Sumatra (Batak)
Indonesia: Sumatra
10. Nyishi (Arunachal Pradesh)
India: Arunachal Pradesh
11. Tangsa (Arunachal Pradesh)
India: Arunachal Pradesh
12. Assamese (Bodo Kachari, Rajbongshi)
India: Assam State.
13. Bodo
India: Assam State (Bodoland Region)
14. Rajbanshi
India: Assam State
  
  
  
South Asia: 
1. KoliIndia: Gujarat
2. Bengali
Bangladesh: Rajshahi, Sylhet
3. Marathi
India: Maharashtra (Aurangabad Region)
4. Baloch
Pakistan: Balochistan (Quetta, Sibi)
5. Uttar Pradesh
India: Uttar Pradesh (Allahabad, Lucknow, Bareilly)
6. Odisha
India: Odisha (Northern District, Central District) Primary group: Odia speakers
7. Karnataka
India: Karnataka (Belgavi, Mysuru)
8. Pathan
Afghanistan: Zabol, Kandahar, Paktika
9. Sindhi
Pakistan: Sindh (Jamshoro, Sanghar)
10. Gujarati
India: Gujarat (Vadodara, Navsari, Anand)
11. Rajasthani
India: Rajasthan (Bhilwara, Pali, Ajmer)
12. Malayali
India: Kerala (Kottayam, Malappuram)
13. Telugu
India: Telangana (Nalgonda, Khammam)
14. Sinhalese
Sri Lanka: Uva Province, Central Province
15. Bhojpuri
India: Uttar Pradesh (Azamgarh, Varanasi, Mirzapur)
16. Nepalese
Nepal: Koshi Pradhesh, Madhesh Pradesh
17. Punjabi
Pakistan: Punjab (Chiniot, Sargodha, Okara). India: Punjab (Jalandhar, Patiala)
18. Makrani
Pakistan: Balochistan (Makran)
19. KhoPakistan: Chitral
20. Bhil
India: Madhya Pradesh
21. Tamil
India: Tamil Nadu (Chola Naadu, Kongu Naadu)
22. Pakistani GI (Kalash)Pakistan: Chitral
  
  
  
The Americas: 
1. Inuit
Canada: Quebec (Nunavik). United States: Alaska (Northwest Arctic Borough)
2. Indigenous North
Canada: Cree tribe (Manitoba)
3. Indigenous Central Plains
United States: South Dakota (Sioux)
4. Indigenous Southwest US
United States: Pima and Navajo ethnic groups.
5. Mexican Indigenous (North, South)
Mexico: Otomi, Tarahumara, Mixtec, Seri, Huichol
6. Indigenous Central America
Guatemala: Maya. El Salvador: Lenca, Pipil
7. Indigenous Caribbean (Taino)
Puerto Rico, Dominican Republic, Cuba
8. Indigenous South America (Northwest, Andes, Southern Cone, Amazonian)
Brazil: Guarani. Peru: Quechua. Argentina: Toba. Colombia: Piapoco
  
  
  
Oceania: 
1. Polynesian
Tuvalu, French Polynesia, Cook Islands
2. Maori
New Zealand: North Island
3. Melanesian
Eastern Papua New Guinea, Fiji, Vanuatu
4. Aboriginal Australian
Australia: (Northern Territory)
5. Hawaiian
United States: Hawaii
6. Moluccan
Indonesia: Maluku Islands (North Maluku)
7. Tahitian
French Polynesia: Tahiti
8. Tonga and SamoaTonga, Samoa
  
  
  
East Asia and Siberia:
 
1. Western Siberian (Chukchi)
Russia: Chukchi Peninsula
2. Central Siberian GI (Nganasan)
Russia: Taymyr Peninsula
3. Chinese North (Han)
China: Heilongjiang, Liaoning
4. Chinese Central (Han)
China: Anhui, Jiangsu, Zhejiang
5. Chinese South (Han)
China: Guangdong, Fujian, Guizhou
6. Japanese
Japan: Yamagata, Niagara, Gifu
7. Korean (South)
South Korea: Chungcheongnam-do, Gangwon-do
8. Manchu (Northeast China)
China: Jilin, Inner Mongolia Autonomous Region
9. Zhuang (South China)
China: Guangxi Zhuang Autonomous Region
10. Ryukyuan
Japan: Ryukyuan Islands
11. Miao (South China)
China: Yunnan, Guizhou
12. Wuling Mountains (Central China South) (She, Miao, Tujia)
China: Guizhou, Hunan, Jiangxi
13. Hengduan Mountains (Yi, Naxi)
China: Hengduan Mountains
14. Tungusic Manchurian (Xibo, Hezhen)
China: Manchuria
15. Mongolian
Mongolia: Tov, Selenge.
  
  
  
Mideast: 
1. Arabian Peninsula (Eastern)
Oman: Dschanub al-Batina, Maskat. UAE: Bani Yas Tribe. Qatar: Qatari Bedouin.
2. Arabian Peninsula (Western)
Saudi Arabia: Hejaz Region
3. Turkish (West, East, Central, Southeast, Southwest, Northwest)
Turkey: Eastern Anatolia Region, Black Sea Region, Southeastern Anatolia Region, Central Anatolia Region, Mediterranean Region, Aegean Region, Marmara Region.
4. Druze
Lebanon: Mount Lebanon Governorate, Chouf district.
5. Lebanese
Lebanon: North Lebanon Region, Mount Lebanon Region, South Lebanon Region
6. Egyptian (North, South)
Egypt: Faiyum, Sharqia, Qena.
7. Jordanian
Jordan: Ajlun, Al Balqa
8. Yemeni (Western, Eastern)
Yemen: East (Aden, Janad, Azal). West (Hadhramaut- Mukalla).
9. Syrian (West)
Syria: Homs, Hama, Rif Damashq
10. Assyrian
Syria: Al Hasakah, Khabur River Valley
11. Palestinian
Palestine: Acre, Haifa, Ramallah, Hebron
12. Bedouin (Sinai)
Sinai: Jabaliya Tribe
13. Iranian (West, Central, East)
Iran: Mazandaran, Qom, Semnan, Qazvin, Markazi, Gilan
14. Kurdish (West, East)
Turkey: Eastern Anatolia Region. Iraq: Dohuk, Sulaymaniyah.
15. Iraqi (Central, South)
Iraq: Babil, Dhi Qar, Wasit
16. Sephardic Jewish
Turkey: Istanbul, Izmir
17. Palestinian GI (Palestinian Christians, Palestinian Samaritans, Palestinian Muslims (Nablus))
Palestine: Nablus, Nazareth, Zababdeh
18. Lebanese GI (Lebanese Christians, rural Lebanese Shia)
Lebanon: Keserwan-Jbeil Governorate, Mount Lebanon Governorate, Baalbek, Hermel.
19. Egyptian GI (Coptic Christian)
Egypt: Alexandria
20. Iranian GI (Zoroastrian)Iran: Tehran
  
  
  
North Africa: 
1. Algerian
Algeria: Saida, Mila, Bouira
2. Tunisian
Tunisia: Siliana, Monastir, Zaghouan
3. Moroccan (North, South)
Morocco: Taza, Fez, Khenifra, Azilal, El Kelaa
4. Libyan (East, West)
Libya: Cyrenaica, Tripolitania
5. Berber (Algeria)
Algeria: Chaoui Ethnic Group
  
  
  
  
Jewish Diaspora Genetic Test:
 
1. Persian Jewish
Iran: Shiraz, Tehran
2. Ashkenazi
Eastern Europe: Warsaw, Budapest, Lodz, Lviv
3. Caucasus Jewish
Caucasus: Chechnya, Dagestan, Ingushetia, Azerbaijan
4. Northern-Central Mesopotamia Jewish
Iraq: Kurdistan, Baghdad
5. Eastern Maghrebi Jewish (Moroccan, Algerian)
Eastern Maghreb: Morocco, Algeria
6. Western Maghrebi Jewish (Tunisian, Libyan)
Western Maghreb: Tunisia, Libya
7. Sephardic Jewish (Turkey)
Turkey: Istanbul, Izmir
8. Northern Levantine Jewish
Syria: Damascus. Lebanon: Beirut.
9. Ethiopian Jewish
Ethiopia: Amhara Region, Tigray Region.
10. Yemeni Jewish
Yemen: Hadhramaut, Aden, Habban
11. Indian Jewish
India: Kerala, Mumbai
  
  
  
Central Asian Genetic Test:
 
1. Hazara
Afghanistan: Hazarajat
2. Kyrgyz
Kyrgyzstan: Osh, Choy
3. Kazakh
Kazakhstan: Almati, Jambil, Jetisu
4. Uzbek (East, West)
Uzbekistan: Syrdarya, Samarkhand, Kashkadarva
5. Uyghur (West, East, Southwest)
China: Hotan, Aksu
6. Pashtun (Afghanistan, Pakistan)
Afghanistan: Ghazni, Partika, Zabol, Nangarhar
7. Turkmen (Southwest, West, Southeast)
Turkmenistan: Bagtyyarlyk Etraby, Buzmeyin Etraby, Kopetdag Etraby
8. Iranian (Northeast, East, Southeast, Central)
Iran: Mazandaran, Qom, Semnan, Qazvin, Markazi, Gilan
9. Mongolian
Mongolia: Tov, Selenge.

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